Showing posts with label Lawrence Berkeley National Laboratory. Show all posts
Showing posts with label Lawrence Berkeley National Laboratory. Show all posts

Tuesday, November 22, 2016

3-D Imaging of DNA Migration

At the Lawrence Berkeley National Laboratory, scientists have been able to document the movement and reorganization of genetic material that takes place within a cell through 3-D visualizations. In the image below, researchers developed a 3-D reconstruction of mouse olfactory cells through X-ray imaging tools. The importance of this discovery allows for easier understanding of patterning and reorganization of chromatin within in the cell's nucleus. By understanding how the chromatin is organized within the nucleus, it helps to determine its relation the the cell's specialization in terms of activated or silenced genes.

The process of the 3-D visualization is performed through a powerful X-ray microscope at Berkeley Lab's Advanced Light Source (ALS). Researchers capture images of the cells of interest at different maturity stages as the cell becomes more specialized for its specific function. This process, known as "differentiation", uses different angles of 2-D images to calculate the 3-D reconstruction of the chromatin formation


The benefits of the 3-D visualization of the chromatin was not having to chemically treat the cell in order to observe the change in the nucleus. Because chromatin is very sensitive, chemical stains had to be used to indirectly image the cell, assuming the stain was evenly distributed. According to Carolyn Larabell, a faculty scientist at Berkeley Lab, originally hypothesized that chromatin exist as a series of disconnected islands. However, through the 3-D visualization, it was determined that chromatin was all connected and packed within the nucleus. Larabell hopes that new insight into gene expression can be made, especially with their current study of mice olfactory genes.

Through using the mouse olfactory genes as a model for studying, researchers hope to target how the gene expression works within Alzheimer's disease. The disease itself attacks the brain's nerve cells in which can cause a loss in senses such as smell. By using the 3-D imaging technique, scientists can understand the connection of the gene expression to the olfactory nerve cells. By using this study as a precursor, scientists can hopefully use this technique to determine cures for other diseases that attack nerves cells. This study is very important in medicine and cell research because it allows scientists how diseases and disorders are related to gene expression. By targeting which expressed gene causes a disease, drugs can be created that can silence the gene expression, thus leading to a very large breakthrough in medicine. 

Sunday, October 27, 2013

DNA gives more Differences within Humans.

           Human beings around the entire world are different and similar in a plethora of ways. Sometimes eye and hair colors are the same. Sometimes simple things like height, weight, or blood type are the same. Much more similarities are found in twins, triplets, and quadruplets. However, there are always differences in every human beings, whether they are twins or not. Fingerprints and footprints are definitely two things that will never-ever end up being the same between any two humans in the world - from past to present to future. Another feature of humans that will never end up being the same is DNA due to never-ending, unique combinations of genes being coded.


   
Now that the topic of DNA has come up, the Lawrence Berkeley National Laboratory can be mentioned where epigenomic profiling was carried out. The researchers here have figured out the genetic basis of a certain type of feature difference within the DNA coding: the face. Axel Visel was the leader for this research with a doctorate in genetics who discovered there are specific gene-leveled sculptors determining the development of the facial feature in humans which are called the transcriptional enhancers. These enhancers came to be found out from the experimentation with mice along with deletion experiments. There is no exact idea of what the purpose of these enhancers are yet but the expression of specific genes within the face development is started with these regulating sequences (transcriptional enhancers). 


Previously, enhancers were looked at by scientists but in the major places of the body: heart, brain, and organ systems, where regulation took place over thousands and thousands of base pairs. Gene expression became more precise through these enhancers controlling their target gene's expression in the development processes giving different phenotypic facial features. Over 4000 were predicted to be ongoing in the precision of facial genes from observing mice. The importance that came out of this research of defining face morphology, basically the skull, was that it provides a foundation for birth defect analysis so it could be built upon on.

Link 1: 
http://www.genengnews.com/gen-news-highlights/one-face-many-gene-level-sculptors/81249023/
Link 2: http://www.cdc.gov/ncbddd/birthdefects/cleftlip.html